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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25628277_25628940_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25628277 - 25628940
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TACTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GAGTCCTTATTA
Flanking Amino Acid:
QSSSSPKRCIDSSGSAAVLT
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.3
0.75
0.8
81
30.6
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
61.2
0.35
1.6
65.31
41.2

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025667
25608342 - 25636002
27661
ENSAPLT00000023356
25586258 - 25636002
49745
ENSAPLT00000022533
25624307 - 25636002
11696
ENSAPLT00000042194
25588875 - 25636002
47128
ENSAPLT00000001305
25587507 - 25636002
48496
ENSAPLT00000039781
25598649 - 25636002
37354