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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25629054_25629366_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25629054 - 25629366
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
GTTTAGAGAAAA
Flanking Amino Acid:
SSMSNGTNDADLFDPPDDRD
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
86.5
0.82
0.7
85.4
29.4
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
39.4
-0.8
2.4
56.95
41.2

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001305
25587507 - 25636002
48496
ENSAPLT00000039781
25598649 - 25636002
37354
ENSAPLT00000025667
25608342 - 25636002
27661
ENSAPLT00000023356
25586258 - 25636002
49745
ENSAPLT00000022533
25624307 - 25636002
11696
ENSAPLT00000042194
25588875 - 25636002
47128