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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25631012_25631255_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25631012 - 25631255
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTAT
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TGTTCTTTTCTG
Flanking Amino Acid:
DFFAHPDLFVSISDQKDPKE
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.5
37.4
Major BPS
73.9
0.59
1
81
30.2
Major PPT
74.3
0.55
1
69.1
37
Minor 5ss
55.9
0.2
2.4
73.2
43.6
Minor BPS
41
-0.8
3.5
59.47
42.8

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025667
25608342 - 25636002
27661
ENSAPLT00000023356
25586258 - 25636002
49745
ENSAPLT00000022533
25624307 - 25636002
11696
ENSAPLT00000042194
25588875 - 25636002
47128
ENSAPLT00000001305
25587507 - 25636002
48496
ENSAPLT00000039781
25598649 - 25636002
37354