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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25631417_25632857_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25631417 - 25632857
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGATG
5'SS Class:
major
3'SS Sequence:
ACACAGGAGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTACTATCACA
Flanking Amino Acid:
RCHWVLPGTEVSEGPVPWVS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.9
39.4
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
42.2
-0.4
1.1
26.4
35.2
Minor 5ss
29.8
-2.3
3.3
38.7
46.6
Minor BPS
48.2
-0.1
2
64.59
42

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022533
25624307 - 25636002
11696
ENSAPLT00000042194
25588875 - 25636002
47128
ENSAPLT00000001305
25587507 - 25636002
48496
ENSAPLT00000039781
25598649 - 25636002
37354
ENSAPLT00000025667
25608342 - 25636002
27661
ENSAPLT00000023356
25586258 - 25636002
49745