Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25633302_25633654_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25633302 - 25633654

Intron Length:

353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTGATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTCTTTTAAAT

Flanking Amino Acid:

MSIGVHNIGQGCVTCLDYDE

Intron Amino Acid Position:

487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

81.7

0.71

0.9

80.3

31.8

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

0.77

1.3

86.29

32.9

Associated Gene:

Gene:

OSBPL9

Ensembl Gene ID:

ENSAPLG00000001003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023356

25586258 - 25636002

49745

ENSAPLT00000022533

25624307 - 25636002

11696

ENSAPLT00000042194

25588875 - 25636002

47128

ENSAPLT00000001305

25587507 - 25636002

48496

ENSAPLT00000039781

25598649 - 25636002

37354

ENSAPLT00000025667

25608342 - 25636002

27661