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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25635822_25635927_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25635822 - 25635927
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
CCCTTTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
KENETSWETRLFHEDGECWV
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.7
69.2
31.5
Minor 5ss
43.9
-0.7
3.1
56.2
48
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023356
25586258 - 25636002
49745
ENSAPLT00000022533
25624307 - 25636002
11696
ENSAPLT00000042194
25588875 - 25636002
47128
ENSAPLT00000001305
25587507 - 25636002
48496
ENSAPLT00000039781
25598649 - 25636002
37354
ENSAPLT00000025667
25608342 - 25636002
27661