Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25638058_25638291_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25638058 - 25638291

Intron Length:

234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGAGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TGCTATTTAAAA

Flanking Amino Acid:

QYLFDRLAREIEALKSVTKS

Intron Amino Acid Position:

1051

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.4

43.3

Major BPS

81.6

0.78

0.8

24.9

Major PPT

76.2

0.59

0.9

72.4

37.8

Minor 5ss

32.6

-2

3.5

48.3

47.5

Minor BPS

0.25

1.6

66.33

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002870

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003045

25637483 - 25663959

26477