Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25638409_25638724_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25638409 - 25638724

Intron Length:

316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGTC

5'SS Class:

strong_major

3'SS Sequence:

CCCCTAAATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

TCCCCCCTAAAT

Flanking Amino Acid:

HLTEEAFSTQVTALIKLKEC

Intron Amino Acid Position:

1012

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

75.7

32.1

Major BPS

0.42

1.1

57.3

41.7

Major PPT

0.25

0.9

54.5

33.1

Minor 5ss

34.3

-1.8

3.6

49.9

46.6

Minor BPS

54.2

0.21

1.8

71.58

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002870

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003045

25637483 - 25663959

26477