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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25639609_25640208_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25639609 - 25640208
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GACTTTTTAATT
Flanking Amino Acid:
FDFLRTKQTLGYHVYPTCRN
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
67.1
0.61
1.2
72.9
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477