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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25640667_25641121_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25640667 - 25641121
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCATCCGAAATT
Flanking Amino Acid:
ANSEVTVYYQSGARSLREYT
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
71.6
0.54
1
72
33.1
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
49.4
0.04
2.3
72.09
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477