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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25641590_25642283_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25641590 - 25642283
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTCTTATGAATA
Flanking Amino Acid:
GLVQGNFTSREAKDFLNYVV
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
36
Major BPS
80
0.75
1
78.6
31
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
37.3
-1.4
2.6
40.4
39.1
Minor BPS
49.4
-0
1.7
60.51
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477