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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25646484_25647130_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25646484 - 25647130
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TGACTTCTAGTT
Flanking Amino Acid:
LHLPEENKYIATDFALKVAD
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
81.9
0.72
0.9
84.5
30.4
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
44.2
-0.3
1.7
59.4
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477