About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25647218_25647756_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25647218 - 25647756
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TATTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTTTTAATA
Flanking Amino Acid:
RWFGTQYSVEDIDKYWSDLW
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
77.9
34.9
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
77.2
0.85
1
79.7
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477