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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25650231_25650311_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25650231 - 25650311
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATGTCTGGAAAG
Flanking Amino Acid:
TDEGYKHFYEVAHVVFQYVK
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
44
-0.5
2.2
51.67
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477