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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25650433_25650885_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25650433 - 25650885
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
AATTCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGTCTTTAATT
Flanking Amino Acid:
KGSVLSFLRKKFWALALYGG
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.2
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
0.9
69.5
35.9
Minor 5ss
61
0.37
2.4
75.1
34.5
Minor BPS
78
0.96
1.1
84.33
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477