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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25654801_25656212_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25654801 - 25656212
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAATCTTTAACA
Flanking Amino Acid:
IDREVEAVDSEYQLARPSDA
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.3
0.41
1
62.8
42
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
76.7
0.83
1.1
76.14
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477