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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25659112_25659296_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25659112 - 25659296
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTACTGAGACT
Flanking Amino Acid:
TRKRGCTEKQSAAALCVAVG
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
82.4
0.73
0.8
80.6
36.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
47.3
-0.1
2.3
75.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477