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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25659619_25663621_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25659619 - 25663621
Intron Length:
4003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATTGCAAAAAAT
Flanking Amino Acid:
VKSPSDPKQYRYIKLQNGLC
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
42.6
-0.4
2.2
65.99
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477