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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25663829_25663876_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25663829 - 25663876
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCCGGGGGT
5'SS Class:
major
3'SS Sequence:
CGGTTCTCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTCTC
U12 Branch Point Sequence:
CGGTTCTCGTCA
Flanking Amino Acid:
GTGTGSGPGPGARPLWAAMP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.2
62.7
38.7
Major BPS
22.7
-1.7
4
48.8
46.3
Major PPT
67.1
0.38
1
65.8
41
Minor 5ss
14.2
-4.1
3.9
20.1
37.8
Minor BPS
36.5
-1
3.4
50.22
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003045
25637483 - 25663959
26477