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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25668398_25670204_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25668398 - 25670204
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
EKGKHLADQLGFDYFEASAK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
RAB3B
Ensembl Gene ID:
ENSAPLG00000004148
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004250
25668210 - 25711419
43210