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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25730477_25730565_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25730477 - 25730565
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTTCTTTCATA
Flanking Amino Acid:
GGYIPRILFMDPSGKVHPEI
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
83.2
0.75
0.7
79.6
25.9
Minor 5ss
33.2
-1.9
3.2
40.2
45.4
Minor BPS
65
0.46
1.7
74.34
38.4

Associated Gene:

Gene:
TXNDC12
Ensembl Gene ID:
ENSAPLG00000022816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018591
25729848 - 25740076
10229