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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25732010_25737883_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25732010 - 25737883
Intron Length:
5874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
LEDGKKEAAASGLPLMVIIH
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
1
83.8
30.3
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
TXNDC12
Ensembl Gene ID:
ENSAPLG00000022816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018591
25729848 - 25740076
10229