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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25737945_25739988_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25737945 - 25739988
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGGCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CATTTATAAACC
Flanking Amino Acid:
SAAASEGLGKGFGDHIHWRT
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.4
56.7
44.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.3
0.66
0.9
76.7
31.9
Minor 5ss
25
-2.9
2.9
22
37
Minor BPS
50.4
-0
1.9
64.04
41.5

Associated Gene:

Gene:
TXNDC12
Ensembl Gene ID:
ENSAPLG00000022816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018591
25729848 - 25740076
10229