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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25799378_25802237_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25799378 - 25802237
Intron Length:
2860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTGTTCATG
Flanking Amino Acid:
CVICHSVLMNAQAWENMMSA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79
0.65
0.9
77.9
36.6
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
43.1
-0.6
2.4
52.64
42.6

Associated Gene:

Gene:
ZFYVE9
Ensembl Gene ID:
ENSAPLG00000004605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004763
25797689 - 25825824
28136