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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25802415_25802762_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25802415 - 25802762
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GAGATGTTAAAT
Flanking Amino Acid:
VGVLKHPGAEVAQPREQRRV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.3
0.86
0.6
82.1
30
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
45.5
-0.2
2.1
59.66
43.2

Associated Gene:

Gene:
ZFYVE9
Ensembl Gene ID:
ENSAPLG00000004605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004763
25797689 - 25825824
28136