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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25814971_25817449_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25814971 - 25817449
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCC
Flanking Amino Acid:
LMLRLGAEYRLYPCPLFSVR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
81.4
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.8
70.9
39.4
Minor 5ss
37.4
-1.4
2.7
45
36
Minor BPS
62.7
0.38
1.6
74.3
36.6

Associated Gene:

Gene:
ZFYVE9
Ensembl Gene ID:
ENSAPLG00000004605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004763
25797689 - 25825824
28136