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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25820958_25822399_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25820958 - 25822399
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
GTTGTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CCTCACTAAATC
Flanking Amino Acid:
AISIHNQPRKVTGASFFVFS
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
68.4
38.2
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
26.7
-2.7
2.9
23.7
36.8
Minor BPS
47.8
-0.1
1.9
56.2
42.7

Associated Gene:

Gene:
ZFYVE9
Ensembl Gene ID:
ENSAPLG00000004605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004763
25797689 - 25825824
28136