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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25824478_25824729_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25824478 - 25824729
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATATCTCAATT
Flanking Amino Acid:
ANGKVIRWTEVFFLENDEQH
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.7
0.65
0.9
83.6
25.2
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
62.9
0.48
1.5
78.07
38.1

Associated Gene:

Gene:
ZFYVE9
Ensembl Gene ID:
ENSAPLG00000004605
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004763
25797689 - 25825824
28136