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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25860426_25861463_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25860426 - 25861463
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
AGVEEATVQQVYHQHISLCR
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
ORC1
Ensembl Gene ID:
ENSAPLG00000005106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005367
25860231 - 25876559
16329