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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25863921_25864882_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25863921 - 25864882
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTGCTTACTG
Flanking Amino Acid:
IMMNRVASRLGLTRMSFQPY
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
51.7
-0
2.1
62.53
46

Associated Gene:

Gene:
ORC1
Ensembl Gene ID:
ENSAPLG00000005106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005367
25860231 - 25876559
16329