About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25865033_25865793_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25865033 - 25865793
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTCAGTCAAAT
Flanking Amino Acid:
RKTTVLIVDELDLLWTRKQN
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
67.8
39.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
25.9
-2.8
2.9
30.5
42.6
Minor BPS
45.2
-0.2
2.4
72.57
43.4

Associated Gene:

Gene:
ORC1
Ensembl Gene ID:
ENSAPLG00000005106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005367
25860231 - 25876559
16329