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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25868337_25868887_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25868337 - 25868887
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
PASMLEEARLRLHVSAIPES
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.5
0.3
1.1
64.9
40.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ORC1
Ensembl Gene ID:
ENSAPLG00000005106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005367
25860231 - 25876559
16329