Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25868995_25870590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25868995 - 25870590

Intron Length:

1596

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGGTTT

5'SS Class:

major

3'SS Sequence:

TTTTTCTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AGGTTCTAATTT

Flanking Amino Acid:

HTPAKTPKKTSLPGTPKTPR

Intron Amino Acid Position:

457

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

72.8

38.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

93.2

0.97

0.6

89.1

19.8

Minor 5ss

45.6

-0.5

3.4

74.4

41.8

Minor BPS

47.2

-0.1

1.9

62.08

42.6

Associated Gene:

Gene:

ORC1

Ensembl Gene ID:

ENSAPLG00000005106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005367

25860231 - 25876559

16329