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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25872833_25873494_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25872833 - 25873494
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TCTTGATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGCTCTTGATT
Flanking Amino Acid:
PTARKKLQLNSPTRFPQNKL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
73.8
36.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
73.8
0.54
0.9
66
39.9
Minor 5ss
47.6
-0.2
2.5
65
40.2
Minor BPS
68.5
0.66
1.2
79.75
36.6

Associated Gene:

Gene:
ORC1
Ensembl Gene ID:
ENSAPLG00000005106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005367
25860231 - 25876559
16329