Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25877930_25878033_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25877930 - 25878033

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACGGCGG

5'SS Class:

major

3'SS Sequence:

TTTCCCCTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

TTTCCCCTCACA

Flanking Amino Acid:

YWKEECFGLTAELVVDKAME

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.8

0.4

1.2

46.7

48.6

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

82.2

0.72

0.7

76.4

25.7

Minor 5ss

29.6

-2.3

3.4

38.6

46.5

Minor BPS

58.3

0.26

2.1

77.88

38.5

Associated Gene:

Gene:

PRPF38A

Ensembl Gene ID:

ENSAPLG00000005827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006071

25877800 - 25881041

3242