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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25878194_25878699_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25878194 - 25878699
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
GTTTGCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTAAATAAGT
Flanking Amino Acid:
IVEFIKNEDFKYVRMLGALY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.6
0.62
0.8
74.3
36.5
Minor 5ss
43.2
-0.7
3.1
56.9
41.6
Minor BPS
46.8
-0.1
2.2
74.03
42

Associated Gene:

Gene:
PRPF38A
Ensembl Gene ID:
ENSAPLG00000005827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006071
25877800 - 25881041
3242