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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25878822_25879326_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25878822 - 25879326
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAT
Flanking Amino Acid:
RKIKSQNRNGEFELMHVDEF
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.2
0.34
0.9
58.8
33
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
66.1
0.58
1.3
79.19
36.4

Associated Gene:

Gene:
PRPF38A
Ensembl Gene ID:
ENSAPLG00000005827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006071
25877800 - 25881041
3242