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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25880232_25880833_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25880232 - 25880833
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACACAT
5'SS Class:
major
3'SS Sequence:
GCTATCTTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTGTTTTTAGTA
Flanking Amino Acid:
YRRSRSRSPRRFFSLSPSPR
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
67.7
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
50.2
0.01
1.7
62.6
43
Minor 5ss
33.7
-1.9
3.2
47.4
48
Minor BPS
55.6
0.17
1.5
63.02
38.1

Associated Gene:

Gene:
PRPF38A
Ensembl Gene ID:
ENSAPLG00000005827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006071
25877800 - 25881041
3242