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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25887788_25890232_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25887788 - 25890232
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTAATCAGAAAT
Flanking Amino Acid:
PLRTRQSSECSDSHQSSYSP
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
68.8
37.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
43.5
-0.7
2.7
55
42.2
Minor BPS
44.5
-0.3
1.8
60.81
42

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216