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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25892444_25892537_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25892444 - 25892537
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTCTTCAATA
Flanking Amino Acid:
HNLGAGVSRKMTNFIMKAFI
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
77.7
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.7
0.6
0.8
73.9
29.7
Minor 5ss
47.2
-0.3
2.9
64.7
41
Minor BPS
67.6
0.55
1.5
75.09
37.1

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216