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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25892586_25892860_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25892586 - 25892860
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTTACAC
Flanking Amino Acid:
QWTSKCIAIEDPFDLNHNLG
Intron Amino Acid Position:
1184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.3
36.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.2
0.84
0.8
84.3
29.6
Minor 5ss
37.6
-1.4
3.6
58.4
46.1
Minor BPS
54.7
0.13
1.7
66.32
39.9

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216