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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25893039_25893395_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25893039 - 25893395
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATATTC
5'SS Class:
major
3'SS Sequence:
CAATTGCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTCTTCAATT
Flanking Amino Acid:
AFFFDDMEELKKRLPSLGKN
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
61.7
0.26
1
55.4
39.9
Minor 5ss
42.7
-0.8
3.1
56.7
42
Minor BPS
70.4
0.72
1.5
83.84
37.7

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216