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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25894690_25895187_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25894690 - 25895187
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTTATTTAAAA
Flanking Amino Acid:
LGYTMKVFAKRCDIGDASRG
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.7
0.82
0.8
84.8
35.6
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
63.8
0.43
1.6
73.42
38.3

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216