About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25895993_25896086_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25895993 - 25896086
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATGTACTAAAGT
Flanking Amino Acid:
GLAKVLKKHPGLRNILPITT
Intron Amino Acid Position:
996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
76.2
0.59
0.9
66.2
40.7
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
49.2
0.02
2.1
71.05
45.7

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216