About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25896614_25898023_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25896614 - 25898023
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTGATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
LERFIRKEYNDKARLCLFGS
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80
0.68
0.9
81.4
34.9
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216