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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25898111_25898530_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25898111 - 25898530
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
ILDIVCKRCFDELSPPLSEQ
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
82
34.8
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216