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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25899860_25901804_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25899860 - 25901804
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGCTAATGAAAT
Flanking Amino Acid:
NWPKRRIAIEDPFALKRNVA
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
46.2
-0.2
2
65.81
43.6

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216