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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25901980_25902124_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25901980 - 25902124
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
CTGTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTGTTCTTATCT
Flanking Amino Acid:
QNNTKEKHGNSLLAFKTPHQ
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.1
38.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.6
0.75
0.8
81.4
34.9
Minor 5ss
34.9
-1.7
2.9
40.4
38.9
Minor BPS
67.2
0.62
1.6
80.16
41.9

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216