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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25902821_25903991_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25902821 - 25903991
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TATTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATACCAGAAAA
Flanking Amino Acid:
LVLAFRYWARLCHIDCQAEG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
49
-0
1.9
65.54
39.5

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216