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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25904119_25905226_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25904119 - 25905226
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTACAATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAATTACA
Flanking Amino Acid:
VPVVFCKDIKSGLTCKVSAR
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.9
0.63
0.9
70.5
38.9
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
48.2
-0.1
2.2
71.06
40

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216